genewise output Score 806.55 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000631_2.0 1 MNSENFRLSEKLVSASYVRQGLDARRGHEQLIRRLLDQ MN ENF LSEK+V SY+RQG +ARR HEQLIR LL+Q MNRENFTLSEKIVLPSYIRQGSEARRSHEQLIRILLEQ OMLM01012508.1-23568 aaagatacagaagtcttaccgtggccacgccaaattgc tagaatctgaatttccatgagcacgggaaattgtttaa gcggcccatggaggccctaggtgattctggccacaggg SPP00000631_2.0 39 GKCPEEGWSESTIELFLNELAVMDSN KCPEEGWSES+IELFLNELAVMDSN RKCPEEGWSESSIELFLNELAVMDSN OMLM01012508.1-23454 GTAAGGT Intron 1 CAGaatcgggtagatagctcagcggagaa <0-----[23454:23376]-0>gagcaagggagctatttaatcttaga gatagaagtgccagccgtgtcggcct SPP00000631_2.0 65 NFLGNCGVGEREGRVASSLVARRHY NFLGNCGVGEREGRVASSLVARRHY NFLGNCGVGEREGRVASSLVARRHY R:R[agg] OMLM01012508.1-23297 atcgatggggaggcggtacggacctAGGTTCAAG Intron 2 attgaggtgagaggtccgttcggaa <2-----[23220:22662] cccaccagagaatgggcccgaaatc SPP00000631_2.0 90 LIHGIGRSGDIAAVQPKAAGSSLLNKITNSVVLDVLKLT LIHGIGRSGDIAA+QPKAAGSSLLNK+TNSVVLD+LK+ LIHGIGRSGDIAAIQPKAAGSSLLNKLTNSVVLDILKIA OMLM01012508.1-22664 TAGGcacgagctggaggaccagggtaccaacaatggtgataag -2> ttagtggcgatcctacaccgcgttaatcactttattatc gctcatattcttttgcataactttcggccttggccgata SPP00000631_2.0 130 VRSVSSCFVVPMATGMSLTLCFL VRSV+SCFVVPMATGMSLTLCFL G:G[ggt] VRSVASCFVVPMATGMSLTLCFL OMLM01012508.1-22543 GGTGTGTA Intron 3 AAGGTgcaggattggcagagaatacttc <1-----[22542:22375]-1> tggtcggtttctccgtgtctgtt tgtggcctgtcgtaagcgtgccg SPP00000631_2.0 154 TLRHRRPKARYILWPRIDQKSCFKSMVTA TLRHRRPKARYI+WPRIDQKSCFK+M+TA TLRHRRPKARYIIWPRIDQKSCFKAMITA OMLM01012508.1-22303 accccacagctaatccagcatttagaaag ctgaggcacgattgcgtaaacgtacttcc ctttgacgttcctgtctcggctcacgcaa SPP00000631_2.0 183 FEPVVIENVLEGDELRTNLEEVE FEPVV+EN LEGDELRT+LE VE G:G[ggc] FEPVVVENALEGDELRTDLEAVE OMLM01012508.1-22216 GGTGATGA Intron 4 CAGGCtgcggggagcggggtcagtgggg <1-----[22215:21524]-1> tactttaactagaatgcatacta tatgggatctattgggtcgaacg SPP00000631_2.0 207 RKIEEFGAENILCVHSTTSCFAPRVPD KIEE+GAENILCVHSTTSCFAPRVPD HKIEELGAENILCVHSTTSCFAPRVPD R:R[agg] OMLM01012508.1-21452 caaggcgggaactgctaatttgccgcgAGGTAATAT Intron 5 aataatgcaattgtaccccgtccgtca <2-----[21369:21247] cgtggcacgccgtttaaacctcgggcc SPP00000631_2.0 234 LEELSVLCAKHDIPHIVNNAYGVQSSKCMHLIQQ +EEL+ +CAK++IPHIVNNAYGVQSSKCMHLIQQ IEELAAMCAKYNIPHIVNNAYGVQSSKCMHLIQQ OMLM01012508.1-21249 CAGGaggcggatgataaccagaagtggcttataccacc -2> taatcctgcaaatcattaacagtaccagtattaa tgggttgtcacctatatctatagggcacgctaga SPP00000631_2.0 269 GARVGRIDAFVQSLDKNFMVPVGGAI GARVGRIDAFVQSLDKNFMVPVGGAI GARVGRIDAFVQSLDKNFMVPVGGAI OMLM01012508.1-21143 GTAGGTA Intron 6 TAGggcggcaggtgcatgaatagcgggga <0-----[21143:20967]-0>gcgtggtacttagtaaatttctggct gttaaactctggtgtgctgtaatcca SPP00000631_2.0 295 IAGFDENFIQEISKIYP RASASP IAGFDE+FIQEISK+YP RASASP IAGFDESFIQEISKMYP G:G[ggt] RASASP OMLM01012508.1-20888 aggtggttacgaaaatcGGTGAGTG Intron 7 TAGGTcgtgtc tcgtaacttaatgatac <1-----[20836:18860]-1> gccccc taattgccaagacggca aaagat SPP00000631_2.0 319 SLDVLITLLTLGANGYKKLLADRK EL SLD+LITLLTLGA+GYKKLL++RK EL SLDILITLLTLGASGYKKLLSERK EL OMLM01012508.1-18839 tcgacaaccacggagtaacctgaaGTGAGTA Intron 8 CAGgc ctatttcttctgcggaaattcaga<0-----[18767:16167]-0>at ccccctccccgaccccgaccaaag gt SPP00000631_2.0 345 YGHLAQELSALAARHGERLLKTPHNPISL Y LAQEL +LA+ HGERLL TPHNPISL YLFLAQELKSLASAHGERLLHTPHNPISL OMLM01012508.1-16160 tttcgcgcaatgtgcggatccaccacatc atttcaatagtcccagagttaccaactct tgcatggggtgctacaaagtctaccgtag SPP00000631_2.0 374 MSLNHLEAHSSSAVTQLGSMLFT MSL+HL+A S AVTQLGSMLFT A:A[gca] MSLDHLQAESDKAVTQLGSMLFT OMLM01012508.1-16073 GGTAGGCT Intron 9 CAGCAatcgcccggagaggaccgtacta <1-----[16072:15933]-1> tctaatacagaactcatgctttc gtgttcgagccgagtggccggcc SPP00000631_2.0 398 RQVSGA VVPLGVQQTVSGHTFSG RQVSGA VVP G +Q VSGHTF G RQVSGA R:R[agg] VVPQGNEQNVSGHTFHG OMLM01012508.1-15861 ccgtggAGGTATGAA Intron 10 TAGGggccgagcagagcatcg gatcgc <2-----[15841:13596]-2> ttcagaaaatggactag gaggac caaactggcatacactc SPP00000631_2.0 422 FMSHSEAYPCPYLNAASAIGITKGDVTVCMKRLEKCLKILKKEKS FMSHSEAYPCPYLNAASA+GIT+ DVT+C+KRL+KCLK LKKE++ FMSHSEAYPCPYLNAASAVGITREDVTLCIKRLDKCLKTLKKEQN OMLM01012508.1-13543 tatctggtctctcaggtgggaacgggactaaccgatcaacaagca ttcacacacgcatacccctgtcgaatctgtagtaagtactaaaaa cggcggaccttccttcctgcctaattagccaaccgcggtggagat // Making a R in phase 2 intron Making a G in phase 1 intron Making a G in phase 1 intron Making a R in phase 2 intron Making a G in phase 1 intron Making a A in phase 1 intron Making a R in phase 2 intron >OMLM01012508.1:subseq(0,25227).pep MNRENFTLSEKIVLPSYIRQGSEARRSHEQLIRILLEQRKCPEEGWSESSIELFLNELAV MDSNNFLGNCGVGEREGRVASSLVARRHYRLIHGIGRSGDIAAIQPKAAGSSLLNKLTNS VVLDILKIAGVRSVASCFVVPMATGMSLTLCFLTLRHRRPKARYIIWPRIDQKSCFKAMI TAGFEPVVVENALEGDELRTDLEAVEHKIEELGAENILCVHSTTSCFAPRVPDRIEELAA MCAKYNIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFDE SFIQEISKMYPGRASASPSLDILITLLTLGASGYKKLLSERKELYLFLAQELKSLASAHG ERLLHTPHNPISLAMSLDHLQAESDKAVTQLGSMLFTRQVSGARVVPQGNEQNVSGHTFH GFMSHSEAYPCPYLNAASAVGITREDVTLCIKRLDKCLKTLKKEQN // >OMLM01012508.1:subseq(0,25227).[23568:13407].sp ATGAACAGGGAGAACTTCACCCTAAGTGAGAAGATAGTGTTGCCCTCCTACATTCGACAG GGGTCTGAGGCACGTCGTAGCCATGAGCAGCTCATCAGAATCTTATTGGAGCAGAGGAAA TGTCCAGAGGAAGGATGGAGTGAGAGCTCCATAGAGCTCTTCCTGAATGAGCTTGCCGTG ATGGACAGCAATAACTTCCTCGGAAACTGCGGAGTGGGAGAGAGAGAAGGTCGGGTGGCG TCCAGCCTCGTGGCAAGACGACATTACAGGCTGATCCATGGCATAGGTCGATCTGGTGAC ATTGCTGCTATTCAGCCCAAAGCTGCAGGATCCAGTCTTCTTAACAAGCTGACCAACTCT GTTGTGTTGGACATCTTGAAAATTGCAGGTGTTCGGAGTGTGGCGAGCTGCTTTGTGGTT CCCATGGCTACAGGAATGAGCTTGACTCTGTGCTTCCTGACCCTTCGTCATCGGAGACCC AAGGCTCGTTACATCATTTGGCCTCGCATTGACCAGAAGTCCTGTTTCAAAGCCATGATC ACAGCAGGCTTTGAACCTGTGGTGGTGGAAAATGCCCTTGAAGGTGATGAGTTGCGGACT GACTTGGAAGCAGTCGAGCACAAGATTGAGGAGCTCGGAGCCGAGAACATCCTGTGTGTT CATTCAACAACATCCTGCTTTGCCCCGCGGGTGCCCGACAGGATTGAGGAGCTGGCTGCT ATGTGTGCCAAATACAACATTCCACATATAGTTAACAATGCATATGGAGTGCAGTCGTCC AAATGCATGCACCTTATACAGCAAGGGGCTCGTGTAGGACGAATCGATGCCTTTGTGCAG AGTTTGGATAAGAACTTTATGGTTCCAGTAGGTGGCGCCATAATTGCAGGATTTGATGAG TCCTTCATACAAGAGATAAGCAAGATGTACCCAGGTCGAGCATCAGCGTCACCTTCCCTC GACATCCTCATTACCCTCCTCACCCTGGGAGCCAGCGGCTACAAGAAACTCCTCTCAGAA AGAAAGGAGCTTTATTTGTTCCTAGCTCAGGAGCTGAAGAGTTTGGCCTCTGCACACGGA GAAAGATTGCTTCACACTCCACACAACCCGATTTCACTGGCAATGTCTCTGGATCATCTC CAGGCAGAGAGCGACAAGGCAGTGACTCAGCTGGGCTCCATGCTGTTCACCCGGCAAGTG TCGGGAGCCAGGGTCGTACCACAAGGCAATGAGCAGAACGTAAGTGGACACACATTCCAT GGCTTCATGTCGCACTCGGAGGCATACCCCTGTCCTTACCTCAATGCTGCCTCCGCTGTG GGCATCACTCGAGAAGATGTTACACTGTGCATCAAACGACTCGACAAGTGCCTGAAGACT CTGAAGAAAGAGCAAAAT // OMLM01012508.1:subseq(0,25227) GeneWise match 23568 13409 806.55 - . OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise cds 23568 23455 0.00 - 0 OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise intron 23454 23376 0.00 - . OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise cds 23375 23221 0.00 - 0 OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise intron 23220 22662 0.00 - . OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise cds 22661 22543 0.00 - 1 OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise intron 22542 22375 0.00 - . OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise cds 22374 22216 0.00 - 2 OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise intron 22215 21524 0.00 - . OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise cds 21523 21370 0.00 - 2 OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise intron 21369 21247 0.00 - . OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise cds 21246 21144 0.00 - 1 OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise intron 21143 20967 0.00 - . OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise cds 20966 20837 0.00 - 0 OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise intron 20836 18860 0.00 - . OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise cds 18859 18768 0.00 - 2 OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise intron 18767 16167 0.00 - . OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise cds 16166 16073 0.00 - 0 OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise intron 16072 15933 0.00 - . OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise cds 15932 15842 0.00 - 2 OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise intron 15841 13596 0.00 - . OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 OMLM01012508.1:subseq(0,25227) GeneWise cds 13595 13409 0.00 - 1 OMLM01012508.1:subseq(0,25227)-genewise-prediction-1 //